Variant report

Variant	rs72827874
Chromosome Location	chr6:16840744-16840745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16831439..16834686-chr6:16840301..16843273,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10949384	0.85[ASN][1000 genomes]
rs12189719	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12190567	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194266	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198579	1.00[ASN][1000 genomes]
rs12200410	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201340	1.00[ASN][1000 genomes]
rs12204343	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204405	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209732	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12216494	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617072	1.00[ASN][1000 genomes]
rs1617978	1.00[ASN][1000 genomes]
rs1744556	1.00[ASN][1000 genomes]
rs1776477	1.00[ASN][1000 genomes]
rs28371453	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56092197	1.00[ASN][1000 genomes]
rs72827866	0.81[AMR][1000 genomes]
rs72827880	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827883	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770936	1.00[ASN][1000 genomes]
rs797579	1.00[ASN][1000 genomes]
rs9477232	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9477234	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16837200-16840800	Weak transcription	NH-A	brain
2	chr6:16837200-16841200	Enhancers	Fetal Heart	heart
3	chr6:16837400-16841000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:16837400-16849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:16837800-16849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:16838400-16841000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:16838400-16841000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:16838600-16840800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:16838600-16843400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:16838600-16849600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:16838800-16840800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:16838800-16849600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:16839000-16841200	Weak transcription	Fetal Brain Female	brain
14	chr6:16839600-16841800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:16839800-16840800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:16839800-16842000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:16840000-16840800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:16840000-16840800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:16840000-16841800	Enhancers	Fetal Brain Male	brain
20	chr6:16840000-16843600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:16840200-16840800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:16840200-16841200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:16840200-16841200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:16840200-16841600	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:16840200-16842200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:16840200-16842400	Enhancers	NHEK	skin
27	chr6:16840400-16840800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:16840400-16840800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:16840400-16841000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:16840400-16841000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:16840400-16841200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:16840400-16841200	Flanking Active TSS	GM12878-XiMat	blood
33	chr6:16840400-16841600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:16840400-16841600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:16840400-16842000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:16840400-16842600	Enhancers	Fetal Lung	lung
37	chr6:16840600-16840800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:16840600-16841200	Enhancers	Brain Angular Gyrus	brain
39	chr6:16840600-16841800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr6:16840600-16842600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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