Variant report

Variant	rs12216494
Chromosome Location	chr6:16851969-16851970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16833227..16835393-chr6:16851673..16854515,2	K562	blood:
2	chr6:16763534..16766479-chr6:16850380..16853533,3	MCF-7	breast:
3	chr6:16849640..16852698-chr6:16854273..16856251,3	K562	blood:
4	chr6:16843780..16847710-chr6:16848313..16852729,4	K562	blood:

Variant related genes	Relation type
ENSG00000272341	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10949384	0.87[EUR][1000 genomes]
rs11963151	0.87[EUR][1000 genomes]
rs12189719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12191511	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194266	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12198579	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12200410	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12201340	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204343	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204405	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12209243	0.82[EUR][1000 genomes]
rs12209732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213812	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1617072	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617978	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1744556	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1776477	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28371453	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55654726	0.92[EUR][1000 genomes]
rs56092197	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56267967	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56311230	0.92[EUR][1000 genomes]
rs56404205	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621064	0.87[AMR][1000 genomes]
rs624591	0.87[AMR][1000 genomes]
rs72827862	0.87[AMR][1000 genomes]
rs72827865	0.87[AMR][1000 genomes]
rs72827871	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72827874	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs770936	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs797579	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9477232	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9477234	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16847800-16853600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:16849000-16852200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:16849200-16852400	Enhancers	NHDF-Ad	bronchial
4	chr6:16849400-16853000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:16849600-16852000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:16849800-16853400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:16849800-16853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:16850000-16852400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:16850200-16852000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr6:16850200-16852200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:16850200-16855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:16850400-16852000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:16850400-16852400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:16850600-16852000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:16850800-16852000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:16850800-16852000	Weak transcription	Fetal Lung	lung
17	chr6:16850800-16852600	Enhancers	Hela-S3	cervix
18	chr6:16851200-16852200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:16851200-16852400	Enhancers	Adipose Nuclei	Adipose
20	chr6:16851200-16855400	Weak transcription	HSMMtube	muscle
21	chr6:16851400-16852400	Flanking Active TSS	GM12878-XiMat	blood
22	chr6:16851600-16852000	Enhancers	Brain Anterior Caudate	brain
23	chr6:16851600-16852200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:16851600-16852200	Enhancers	Brain Substantia Nigra	brain
25	chr6:16851600-16852400	Enhancers	Brain Hippocampus Middle	brain
26	chr6:16851600-16855200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:16851800-16852200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:16851800-16852400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:16851800-16852400	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:16851800-16852400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:16851800-16852400	Enhancers	A549	lung
32	chr6:16851800-16852400	Enhancers	K562	blood
33	chr6:16851800-16852400	Enhancers	Osteobl	bone
34	chr6:16851800-16852800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links