Variant report

Variant	rs56092197
Chromosome Location	chr6:16883306-16883307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16825724..16828352-chr6:16882552..16885274,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10949384	0.85[ASN][1000 genomes]
rs12189719	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12190567	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191511	0.88[EUR][1000 genomes]
rs12194266	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198579	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200410	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201340	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204343	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204405	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209732	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12212603	0.82[AMR][1000 genomes]
rs12216494	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617072	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617978	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744556	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776477	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28371453	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654726	1.00[EUR][1000 genomes]
rs56311230	1.00[EUR][1000 genomes]
rs72827874	1.00[ASN][1000 genomes]
rs72827880	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827883	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770936	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs797579	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9477232	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9477234	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1838885	chr6:16866948-16885765	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1837694	chr6:16866948-16885869	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1842967	chr6:16866948-16885869	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758037	chr6:16873271-16912538	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759409	chr6:16873271-16912538	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3472182	chr6:16882973-16887971	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16883200-16883600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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