Variant report

Variant	rs72990707
Chromosome Location	chr3:142489463-142489464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3732742	1.00[AMR][1000 genomes]
rs6782209	1.00[AMR][1000 genomes]
rs72990714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72993783	1.00[AMR][1000 genomes]
rs72994549	1.00[AMR][1000 genomes]
rs72999509	1.00[AMR][1000 genomes]
rs72999535	1.00[AMR][1000 genomes]
rs73000115	1.00[AMR][1000 genomes]
rs73000180	1.00[AMR][1000 genomes]
rs73002059	1.00[AMR][1000 genomes]
rs73003356	1.00[AMR][1000 genomes]
rs73003379	1.00[AMR][1000 genomes]
rs7627274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142464800-142493200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:142467800-142503400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:142468200-142489800	Weak transcription	Ovary	ovary
4	chr3:142468200-142511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:142468400-142489800	Weak transcription	NH-A	brain
7	chr3:142468400-142498000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:142468400-142501400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:142468400-142501400	Weak transcription	HSMM	muscle
10	chr3:142468400-142501600	Weak transcription	Left Ventricle	heart
11	chr3:142468400-142508800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:142468400-142525200	Weak transcription	Fetal Brain Male	brain
13	chr3:142468400-142526800	Weak transcription	NHDF-Ad	bronchial
14	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
15	chr3:142468600-142525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:142468800-142492000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:142468800-142513200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:142469200-142491200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:142470600-142505800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:142472400-142509800	Weak transcription	HepG2	liver
21	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:142475200-142498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:142481600-142501400	Weak transcription	Fetal Stomach	stomach
24	chr3:142484400-142489800	Weak transcription	Fetal Kidney	kidney
25	chr3:142484600-142506400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:142487000-142502400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:142487400-142501400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:142487400-142501400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:142487400-142513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:142487600-142503400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:142487800-142506800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:142488400-142489600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:142488400-142490000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:142488800-142491800	Weak transcription	Fetal Lung	lung
35	chr3:142488800-142498200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:142488800-142505000	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:142488800-142527000	Weak transcription	Brain Anterior Caudate	brain
38	chr3:142489000-142489800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:142489200-142501400	Weak transcription	Aorta	Aorta
40	chr3:142489400-142489800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links