Variant report

Variant	rs73145360
Chromosome Location	chr3:25194710-25194711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56674042	1.00[AMR][1000 genomes]
rs56756419	1.00[AMR][1000 genomes]
rs56916888	1.00[AMR][1000 genomes]
rs58136298	1.00[AMR][1000 genomes]
rs58793044	1.00[AMR][1000 genomes]
rs60293624	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60459884	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61485952	1.00[AMR][1000 genomes]
rs73141436	1.00[AMR][1000 genomes]
rs73141450	1.00[AMR][1000 genomes]
rs73141452	1.00[AMR][1000 genomes]
rs73141456	1.00[AMR][1000 genomes]
rs73141458	1.00[AMR][1000 genomes]
rs73141466	1.00[AMR][1000 genomes]
rs73141482	1.00[AMR][1000 genomes]
rs73141492	1.00[AMR][1000 genomes]
rs73143439	1.00[AMR][1000 genomes]
rs73143463	1.00[AMR][1000 genomes]
rs73144975	1.00[AMR][1000 genomes]
rs73145366	1.00[AMR][1000 genomes]
rs73145368	1.00[AMR][1000 genomes]
rs73145374	1.00[AMR][1000 genomes]
rs73147305	1.00[AMR][1000 genomes]
rs73147386	1.00[AMR][1000 genomes]
rs73149123	1.00[AMR][1000 genomes]
rs73149124	1.00[AMR][1000 genomes]
rs73149131	1.00[AMR][1000 genomes]
rs73149150	1.00[AMR][1000 genomes]
rs73149153	1.00[AMR][1000 genomes]
rs73151298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25191400-25195200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:25192800-25197600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:25192800-25198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:25192800-25198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:25193200-25196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:25193400-25194800	Enhancers	Fetal Brain Male	brain
7	chr3:25193400-25197200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:25193400-25197200	Weak transcription	NH-A	brain
9	chr3:25193400-25197600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:25193400-25197800	Weak transcription	Fetal Stomach	stomach
11	chr3:25193400-25197800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:25193600-25197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:25193600-25197200	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:25193600-25197400	Weak transcription	NHDF-Ad	bronchial
15	chr3:25193600-25197600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:25193800-25194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:25193800-25195000	Enhancers	HUVEC	blood vessel
18	chr3:25193800-25196800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:25193800-25197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:25193800-25197400	Weak transcription	Osteobl	bone
21	chr3:25194000-25197400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:25194000-25197600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:25194000-25197600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
25	chr3:25194400-25194800	Enhancers	Fetal Heart	heart
26	chr3:25194400-25195400	Enhancers	Fetal Lung	lung
27	chr3:25194400-25196200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:25194600-25194800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:25194600-25194800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:25194600-25194800	Enhancers	Right Atrium	heart
31	chr3:25194600-25195600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:25194600-25195600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr3:25194600-25195600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:25194600-25195600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr3:25194600-25195600	Enhancers	Brain Substantia Nigra	brain
36	chr3:25194600-25196600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:25194600-25196800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr3:25194600-25197400	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links