Variant report

Variant	rs73149124
Chromosome Location	chr3:25096680-25096681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56674042	1.00[AMR][1000 genomes]
rs56756419	1.00[AMR][1000 genomes]
rs56916888	1.00[AMR][1000 genomes]
rs58136298	1.00[AMR][1000 genomes]
rs58793044	1.00[AMR][1000 genomes]
rs60293624	1.00[AMR][1000 genomes]
rs60459884	1.00[AMR][1000 genomes]
rs61485952	1.00[AMR][1000 genomes]
rs73137229	1.00[AMR][1000 genomes]
rs73141436	1.00[AMR][1000 genomes]
rs73141450	1.00[AMR][1000 genomes]
rs73141452	1.00[AMR][1000 genomes]
rs73141456	1.00[AMR][1000 genomes]
rs73141458	1.00[AMR][1000 genomes]
rs73141466	1.00[AMR][1000 genomes]
rs73141482	1.00[AMR][1000 genomes]
rs73141492	1.00[AMR][1000 genomes]
rs73143439	1.00[AMR][1000 genomes]
rs73143463	1.00[AMR][1000 genomes]
rs73144975	1.00[AMR][1000 genomes]
rs73145360	1.00[AMR][1000 genomes]
rs73145366	1.00[AMR][1000 genomes]
rs73145368	1.00[AMR][1000 genomes]
rs73145374	1.00[AMR][1000 genomes]
rs73147305	1.00[AMR][1000 genomes]
rs73149123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149131	1.00[AMR][1000 genomes]
rs73149150	1.00[AMR][1000 genomes]
rs73149153	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3433793	chr3:25096482-25096684	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25091000-25097400	Weak transcription	Fetal Lung	lung
2	chr3:25096200-25097400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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