Variant report

Variant	rs73147305
Chromosome Location	chr3:25232871-25232872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56674042	1.00[AMR][1000 genomes]
rs56756419	1.00[AMR][1000 genomes]
rs56916888	1.00[AMR][1000 genomes]
rs58136298	1.00[AMR][1000 genomes]
rs58793044	1.00[AMR][1000 genomes]
rs60293624	1.00[AMR][1000 genomes]
rs60459884	1.00[AMR][1000 genomes]
rs61485952	1.00[AMR][1000 genomes]
rs73141436	1.00[AMR][1000 genomes]
rs73141450	1.00[AMR][1000 genomes]
rs73141452	1.00[AMR][1000 genomes]
rs73141456	1.00[AMR][1000 genomes]
rs73141458	1.00[AMR][1000 genomes]
rs73141466	1.00[AMR][1000 genomes]
rs73141482	1.00[AMR][1000 genomes]
rs73141492	1.00[AMR][1000 genomes]
rs73143439	1.00[AMR][1000 genomes]
rs73143463	1.00[AMR][1000 genomes]
rs73145360	1.00[AMR][1000 genomes]
rs73145366	1.00[AMR][1000 genomes]
rs73145368	1.00[AMR][1000 genomes]
rs73145374	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147386	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149123	1.00[AMR][1000 genomes]
rs73149124	1.00[AMR][1000 genomes]
rs73149131	1.00[AMR][1000 genomes]
rs73149150	1.00[AMR][1000 genomes]
rs73149153	1.00[AMR][1000 genomes]
rs73151298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25232200-25233400	Enhancers	Fetal Stomach	stomach
2	chr3:25232800-25233200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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