Variant report

Variant	rs73145366
Chromosome Location	chr3:25200583-25200584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56674042	1.00[AMR][1000 genomes]
rs56756419	1.00[AMR][1000 genomes]
rs56916888	1.00[AMR][1000 genomes]
rs58136298	1.00[AMR][1000 genomes]
rs58793044	1.00[AMR][1000 genomes]
rs60293624	1.00[AMR][1000 genomes]
rs60459884	1.00[AMR][1000 genomes]
rs61485952	1.00[AMR][1000 genomes]
rs73141436	1.00[AMR][1000 genomes]
rs73141450	1.00[AMR][1000 genomes]
rs73141452	1.00[AMR][1000 genomes]
rs73141456	1.00[AMR][1000 genomes]
rs73141458	1.00[AMR][1000 genomes]
rs73141466	1.00[AMR][1000 genomes]
rs73141482	1.00[AMR][1000 genomes]
rs73141492	1.00[AMR][1000 genomes]
rs73143439	1.00[AMR][1000 genomes]
rs73143463	1.00[AMR][1000 genomes]
rs73144975	1.00[AMR][1000 genomes]
rs73145360	1.00[AMR][1000 genomes]
rs73145368	1.00[AMR][1000 genomes]
rs73145374	1.00[AMR][1000 genomes]
rs73147305	1.00[AMR][1000 genomes]
rs73147386	1.00[AMR][1000 genomes]
rs73149123	1.00[AMR][1000 genomes]
rs73149124	1.00[AMR][1000 genomes]
rs73149131	1.00[AMR][1000 genomes]
rs73149150	1.00[AMR][1000 genomes]
rs73149153	1.00[AMR][1000 genomes]
rs73151298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
2	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25197800-25200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:25198200-25200600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:25198400-25200600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:25198400-25200600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:25198600-25201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:25198600-25201200	Weak transcription	Fetal Heart	heart
9	chr3:25198600-25211200	Weak transcription	Fetal Stomach	stomach
10	chr3:25198800-25200600	Weak transcription	HSMM	muscle
11	chr3:25198800-25207000	Weak transcription	Fetal Lung	lung
12	chr3:25200400-25200600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:25200400-25201400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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