Variant report

Variant	rs73149150
Chromosome Location	chr3:25111753-25111754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56674042	1.00[AMR][1000 genomes]
rs56756419	1.00[AMR][1000 genomes]
rs56916888	1.00[AMR][1000 genomes]
rs58136298	1.00[AMR][1000 genomes]
rs58793044	1.00[AMR][1000 genomes]
rs60293624	1.00[AMR][1000 genomes]
rs60459884	1.00[AMR][1000 genomes]
rs61485952	1.00[AMR][1000 genomes]
rs73137229	1.00[AMR][1000 genomes]
rs73141436	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141450	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141452	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141456	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141458	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143439	1.00[AMR][1000 genomes]
rs73143463	1.00[AMR][1000 genomes]
rs73144975	1.00[AMR][1000 genomes]
rs73145360	1.00[AMR][1000 genomes]
rs73145366	1.00[AMR][1000 genomes]
rs73145368	1.00[AMR][1000 genomes]
rs73145374	1.00[AMR][1000 genomes]
rs73147305	1.00[AMR][1000 genomes]
rs73147386	1.00[AMR][1000 genomes]
rs73149123	1.00[AMR][1000 genomes]
rs73149124	1.00[AMR][1000 genomes]
rs73149131	1.00[AMR][1000 genomes]
rs73149153	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25104600-25112200	Weak transcription	Pancreas	Pancrea
2	chr3:25111200-25111800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25111200-25112000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:25111400-25111800	Active TSS	Colon Smooth Muscle	Colon
5	chr3:25111400-25115600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links