Variant report
| Variant | rs56674042 |
|---|---|
| Chromosome Location | chr3:25172040-25172041 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs56756419 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56916888 | 1.00[AMR][1000 genomes] |
| rs58136298 | 1.00[AMR][1000 genomes] |
| rs58793044 | 1.00[AMR][1000 genomes] |
| rs60293624 | 1.00[AMR][1000 genomes] |
| rs60459884 | 1.00[AMR][1000 genomes] |
| rs61485952 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73141436 | 1.00[AMR][1000 genomes] |
| rs73141450 | 1.00[AMR][1000 genomes] |
| rs73141452 | 1.00[AMR][1000 genomes] |
| rs73141456 | 1.00[AMR][1000 genomes] |
| rs73141458 | 1.00[AMR][1000 genomes] |
| rs73141466 | 1.00[AMR][1000 genomes] |
| rs73141482 | 1.00[AMR][1000 genomes] |
| rs73141492 | 1.00[AMR][1000 genomes] |
| rs73143439 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73143463 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73144975 | 1.00[AMR][1000 genomes] |
| rs73145360 | 1.00[AMR][1000 genomes] |
| rs73145366 | 1.00[AMR][1000 genomes] |
| rs73145368 | 1.00[AMR][1000 genomes] |
| rs73145374 | 1.00[AMR][1000 genomes] |
| rs73147305 | 1.00[AMR][1000 genomes] |
| rs73147386 | 1.00[AMR][1000 genomes] |
| rs73149123 | 1.00[AMR][1000 genomes] |
| rs73149124 | 1.00[AMR][1000 genomes] |
| rs73149131 | 1.00[AMR][1000 genomes] |
| rs73149150 | 1.00[AMR][1000 genomes] |
| rs73149153 | 1.00[AMR][1000 genomes] |
| rs73151298 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3450541 | chr3:25168848-25172646 | Flanking Active TSS ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25171800-25173600 | Enhancers | Fetal Stomach | stomach |
| 2 | chr3:25172000-25172600 | Enhancers | Fetal Lung | lung |
