Variant report

Variant	rs73157202
Chromosome Location	chr13:30500682-30500683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30498435..30501654-chr13:30681390..30683059,3	MCF-7	breast:
2	chr13:30420595..30432624-chr13:30489594..30503683,39	MCF-7	breast:
3	chr13:30414305..30417482-chr13:30498003..30500774,5	MCF-7	breast:
4	chr13:30494996..30500904-chr13:30681667..30688775,12	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBL3-1	chr13:30500640-30500788	XLOC_010552

Variant related genes	Relation type
ENSG00000122042	Chromatin interaction
ENSG00000224511	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17503208	1.00[AFR][1000 genomes]
rs17503263	1.00[AFR][1000 genomes]
rs17503526	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17503533	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17504027	0.87[AMR][1000 genomes]
rs17587770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17587798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588071	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17588196	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17588286	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17588314	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17588510	0.87[AMR][1000 genomes]
rs2094054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55708888	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55734322	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55741316	0.87[AMR][1000 genomes]
rs55772458	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55837941	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55886241	0.82[AMR][1000 genomes]
rs55913576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55922204	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55951457	0.87[AMR][1000 genomes]
rs56077878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56249225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56274510	1.00[AFR][1000 genomes]
rs56275431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56399700	0.87[AMR][1000 genomes]
rs56409314	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73157198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157199	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159320	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159321	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159339	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159340	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159349	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159358	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159360	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159362	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159365	0.87[AMR][1000 genomes]
rs73159366	0.87[AMR][1000 genomes]
rs73159371	0.87[AMR][1000 genomes]
rs73159389	0.87[AMR][1000 genomes]
rs73159397	0.87[AMR][1000 genomes]
rs73161503	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30491600-30501000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr13:30494200-30501400	Enhancers	Stomach Mucosa	stomach
3	chr13:30496600-30500800	Enhancers	Liver	Liver
4	chr13:30496800-30500800	Enhancers	Brain Hippocampus Middle	brain
5	chr13:30496800-30501000	Enhancers	Fetal Intestine Small	intestine
6	chr13:30497000-30500800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:30497000-30501000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:30497200-30500800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr13:30497200-30500800	Enhancers	Fetal Lung	lung
10	chr13:30497400-30500800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr13:30497600-30501000	Enhancers	Right Atrium	heart
12	chr13:30498400-30500800	Enhancers	Aorta	Aorta
13	chr13:30498400-30508000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:30498800-30500800	Enhancers	Hela-S3	cervix
15	chr13:30498800-30501000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:30498800-30513200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:30499000-30510000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:30499200-30509000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:30499600-30500800	Enhancers	HepG2	liver
20	chr13:30500000-30500800	Enhancers	Esophagus	oesophagus
21	chr13:30500000-30500800	Enhancers	A549	lung
22	chr13:30500000-30501000	Enhancers	Gastric	stomach
23	chr13:30500000-30501000	Enhancers	Pancreas	Pancrea
24	chr13:30500000-30503200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:30500000-30503200	Weak transcription	NHEK	skin
26	chr13:30500000-30503400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:30500200-30500800	Enhancers	Right Ventricle	heart
28	chr13:30500200-30501000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:30500200-30503200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:30500400-30503400	Weak transcription	Placenta	Placenta
31	chr13:30500600-30500800	Enhancers	Fetal Kidney	kidney
32	chr13:30500600-30503200	Weak transcription	HMEC	breast

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