Variant report

Variant	rs73161503
Chromosome Location	chr13:30589706-30589707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs17503526	1.00[AMR][1000 genomes]
rs17503533	1.00[AMR][1000 genomes]
rs17504027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17587770	0.87[AMR][1000 genomes]
rs17587798	0.87[AMR][1000 genomes]
rs17588071	1.00[AMR][1000 genomes]
rs17588196	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17588286	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17588314	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17588510	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2094054	0.87[AMR][1000 genomes]
rs55708888	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55734322	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55741316	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55772458	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55804174	0.82[AMR][1000 genomes]
rs55837941	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55886241	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55913576	0.87[AMR][1000 genomes]
rs55922204	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55951457	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56077878	0.87[AMR][1000 genomes]
rs56249225	0.87[AMR][1000 genomes]
rs56275431	0.87[AMR][1000 genomes]
rs56399700	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56409314	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60828722	0.98[EUR][1000 genomes]
rs73157199	0.82[AMR][1000 genomes]
rs73157201	0.87[AMR][1000 genomes]
rs73157202	0.87[AMR][1000 genomes]
rs73159303	0.87[AMR][1000 genomes]
rs73159304	0.87[AMR][1000 genomes]
rs73159310	0.87[AMR][1000 genomes]
rs73159320	1.00[AMR][1000 genomes]
rs73159321	1.00[AMR][1000 genomes]
rs73159339	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73159340	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73159349	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159358	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159360	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159362	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159365	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159366	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159371	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159392	0.98[EUR][1000 genomes]
rs73159395	0.96[EUR][1000 genomes]
rs73159397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159398	0.96[EUR][1000 genomes]
rs73159402	0.94[EUR][1000 genomes]
rs73161515	0.82[AMR][1000 genomes]
rs73161517	0.82[AMR][1000 genomes]
rs73161519	0.82[AMR][1000 genomes]
rs9579516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:30587200-30593400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30588200-30589800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:30588200-30590000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr13:30588800-30594200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:30589200-30589800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:30589200-30589800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:30589200-30589800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:30589400-30589800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:30589400-30590400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:30589400-30590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:30589600-30589800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr13:30589600-30589800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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