Variant report

Variant	rs17588071
Chromosome Location	chr13:30520402-30520403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17503174	0.91[MKK][hapmap]
rs17503208	1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17503263	0.82[CEU][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17503526	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17503533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17504027	0.83[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes]
rs17587770	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17587798	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17588196	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17588286	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17588314	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17588510	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2094054	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41449847	0.91[MKK][hapmap]
rs55708888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55734322	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55741316	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55772458	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55804174	0.82[AMR][1000 genomes]
rs55837941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55886241	0.94[AMR][1000 genomes]
rs55913576	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55922204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55951457	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56077878	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56249225	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56274510	1.00[AFR][1000 genomes]
rs56275431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56399700	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56409314	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60828722	0.80[EUR][1000 genomes]
rs73157198	0.91[EUR][1000 genomes]
rs73157199	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73157201	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73157202	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159303	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159304	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159310	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159339	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159340	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159349	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159358	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159360	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159362	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159365	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73159366	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73159371	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73159389	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73159392	0.80[EUR][1000 genomes]
rs73159395	0.82[EUR][1000 genomes]
rs73159397	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73159398	0.82[EUR][1000 genomes]
rs73161503	1.00[AMR][1000 genomes]
rs73161515	0.82[AMR][1000 genomes]
rs73161517	0.82[AMR][1000 genomes]
rs73161519	0.82[AMR][1000 genomes]
rs9579516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30510800-30521600	Weak transcription	Pancreas	Pancrea
2	chr13:30514000-30522600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30517400-30526000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30518200-30522000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:30518600-30528600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:30519000-30524000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr13:30520000-30520800	Enhancers	Stomach Mucosa	stomach
8	chr13:30520000-30521000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:30520000-30521000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:30520200-30520800	Enhancers	Fetal Heart	heart
11	chr13:30520200-30523000	Weak transcription	Placenta	Placenta
12	chr13:30520400-30520600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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