Variant report

Variant	rs55734322
Chromosome Location	chr13:30539008-30539009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17503526	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17503533	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17504027	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17587770	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17587798	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17588071	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17588196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588510	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2094054	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55708888	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55741316	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55772458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55804174	0.82[AMR][1000 genomes]
rs55837941	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55886241	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55913576	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55922204	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55951457	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56077878	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56249225	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56275431	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56399700	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56409314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60828722	0.84[EUR][1000 genomes]
rs73157198	0.87[EUR][1000 genomes]
rs73157199	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73157201	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73157202	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159303	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159304	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159310	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73159320	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159321	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159349	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159358	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159360	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159362	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159365	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159366	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159371	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159389	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73159392	0.84[EUR][1000 genomes]
rs73159395	0.82[EUR][1000 genomes]
rs73159397	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73159398	0.82[EUR][1000 genomes]
rs73159402	0.81[EUR][1000 genomes]
rs73161503	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73161515	0.82[AMR][1000 genomes]
rs73161517	0.82[AMR][1000 genomes]
rs73161519	0.82[AMR][1000 genomes]
rs9579516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30537800-30539200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr13:30537800-30539600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr13:30538000-30539200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr13:30538400-30539400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:30538600-30539800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30538800-30539200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr13:30538800-30539200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:30538800-30539400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:30539000-30539200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:30539000-30539800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links