Variant report
| Variant | rs73159392 |
|---|---|
| Chromosome Location | chr13:30585772-30585773 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:30499303..30501261-chr13:30585633..30587569,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs17503526 | 0.80[EUR][1000 genomes] |
| rs17503533 | 0.80[EUR][1000 genomes] |
| rs17504027 | 0.96[EUR][1000 genomes] |
| rs17588071 | 0.80[EUR][1000 genomes] |
| rs17588196 | 0.84[EUR][1000 genomes] |
| rs17588286 | 0.84[EUR][1000 genomes] |
| rs17588314 | 0.84[EUR][1000 genomes] |
| rs17588510 | 1.00[EUR][1000 genomes] |
| rs55708888 | 0.82[EUR][1000 genomes] |
| rs55734322 | 0.84[EUR][1000 genomes] |
| rs55741316 | 0.96[EUR][1000 genomes] |
| rs55772458 | 0.82[EUR][1000 genomes] |
| rs55837941 | 0.82[EUR][1000 genomes] |
| rs55886241 | 0.92[EUR][1000 genomes] |
| rs55922204 | 0.82[EUR][1000 genomes] |
| rs55951457 | 0.96[EUR][1000 genomes] |
| rs56399700 | 1.00[EUR][1000 genomes] |
| rs56409314 | 0.84[EUR][1000 genomes] |
| rs60828722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73159320 | 0.80[EUR][1000 genomes] |
| rs73159321 | 0.80[EUR][1000 genomes] |
| rs73159339 | 0.84[EUR][1000 genomes] |
| rs73159340 | 0.84[EUR][1000 genomes] |
| rs73159349 | 0.90[EUR][1000 genomes] |
| rs73159358 | 0.90[EUR][1000 genomes] |
| rs73159360 | 0.90[EUR][1000 genomes] |
| rs73159362 | 0.90[EUR][1000 genomes] |
| rs73159365 | 0.96[EUR][1000 genomes] |
| rs73159366 | 0.96[EUR][1000 genomes] |
| rs73159371 | 0.96[EUR][1000 genomes] |
| rs73159389 | 1.00[EUR][1000 genomes] |
| rs73159394 | 0.81[AFR][1000 genomes] |
| rs73159395 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73159397 | 0.98[EUR][1000 genomes] |
| rs73159398 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73159402 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73161503 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3520592 | chr13:30243601-30648554 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv3520593 | chr13:30243601-30648554 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:30578800-30588200 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr13:30580800-30586800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr13:30581000-30592000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
