Variant report

Variant	rs55922204
Chromosome Location	chr13:30528639-30528640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30522245..30525192-chr13:30528354..30530435,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBL3-6	chr13:30528302-30528980	l_804_chr13:30525362-30528980_brain

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17503208	1.00[AFR][1000 genomes]
rs17503263	1.00[AFR][1000 genomes]
rs17503526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17503533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17504027	1.00[AMR][1000 genomes]
rs17587770	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17587798	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17588071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17588196	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17588286	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17588314	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17588510	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094054	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55708888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55734322	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55741316	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55772458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55804174	0.82[AMR][1000 genomes]
rs55837941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55886241	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55913576	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55951457	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56077878	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56249225	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56274510	1.00[AFR][1000 genomes]
rs56275431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56399700	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56409314	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60828722	0.82[EUR][1000 genomes]
rs73157198	0.89[EUR][1000 genomes]
rs73157199	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73157201	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73157202	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159303	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159304	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159310	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159339	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159340	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159349	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159358	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159360	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159362	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73159365	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73159366	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73159371	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73159389	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73159392	0.82[EUR][1000 genomes]
rs73159397	1.00[AMR][1000 genomes]
rs73161503	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73161515	0.82[AMR][1000 genomes]
rs73161517	0.82[AMR][1000 genomes]
rs73161519	0.82[AMR][1000 genomes]
rs9579516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30523200-30529400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30527600-30529200	Enhancers	Fetal Thymus	thymus
3	chr13:30527600-30529600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:30527800-30528800	Enhancers	Adipose Nuclei	Adipose
5	chr13:30528000-30528800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr13:30528000-30529000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr13:30528000-30529000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:30528000-30529000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr13:30528000-30529000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr13:30528000-30529200	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr13:30528000-30529600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr13:30528200-30528800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:30528200-30528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:30528200-30528800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr13:30528200-30528800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr13:30528200-30529000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr13:30528200-30529000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr13:30528200-30529000	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr13:30528200-30529200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr13:30528400-30528800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr13:30528400-30528800	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr13:30528400-30528800	Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr13:30528400-30528800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:30528400-30528800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:30528400-30528800	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr13:30528400-30528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:30528400-30529000	Enhancers	Spleen	Spleen
28	chr13:30528600-30528800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr13:30528600-30528800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
30	chr13:30528600-30528800	Bivalent Enhancer	NHLF	lung
31	chr13:30528600-30529000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr13:30528600-30529000	Flanking Active TSS	Liver	Liver
33	chr13:30528600-30529000	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr13:30528600-30529000	Enhancers	Thymus	Thymus
35	chr13:30528600-30529200	Enhancers	Small Intestine	intestine
36	chr13:30528600-30529400	Bivalent Enhancer	HepG2	liver
37	chr13:30528600-30529600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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