Variant report

Variant	rs9579516
Chromosome Location	chr13:30593550-30593551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30577169..30579617-chr13:30592820..30595697,3	MCF-7	breast:
2	chr13:30587129..30589205-chr13:30592153..30594198,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17503526	0.82[AMR][1000 genomes]
rs17503533	0.82[AMR][1000 genomes]
rs17504027	0.82[AMR][1000 genomes]
rs17504394	1.00[ASN][1000 genomes]
rs17587784	1.00[ASN][1000 genomes]
rs17588071	0.82[AMR][1000 genomes]
rs17588196	0.82[AMR][1000 genomes]
rs17588286	0.82[AMR][1000 genomes]
rs17588314	0.82[AMR][1000 genomes]
rs17588510	0.82[AMR][1000 genomes]
rs55708888	0.82[AMR][1000 genomes]
rs55734322	0.82[AMR][1000 genomes]
rs55741316	0.82[AMR][1000 genomes]
rs55772458	0.82[AMR][1000 genomes]
rs55804174	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837941	0.82[AMR][1000 genomes]
rs55922204	0.82[AMR][1000 genomes]
rs55951457	0.82[AMR][1000 genomes]
rs55966797	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56126555	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56399700	0.82[AMR][1000 genomes]
rs56409314	0.82[AMR][1000 genomes]
rs73159320	0.82[AMR][1000 genomes]
rs73159321	0.82[AMR][1000 genomes]
rs73159339	0.82[AMR][1000 genomes]
rs73159340	0.82[AMR][1000 genomes]
rs73159349	0.82[AMR][1000 genomes]
rs73159358	0.82[AMR][1000 genomes]
rs73159360	0.82[AMR][1000 genomes]
rs73159365	0.82[AMR][1000 genomes]
rs73159366	0.82[AMR][1000 genomes]
rs73159371	0.82[AMR][1000 genomes]
rs73159389	0.82[AMR][1000 genomes]
rs73159397	0.82[AMR][1000 genomes]
rs73161503	0.82[AMR][1000 genomes]
rs73161515	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448295	1.00[ASN][1000 genomes]
rs74042848	1.00[ASN][1000 genomes]
rs74043025	1.00[ASN][1000 genomes]
rs9579518	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9579519	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9579520	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30588800-30594200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:30589800-30593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:30589800-30593800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:30589800-30594200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:30590400-30593800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30591000-30594200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:30591000-30594200	Weak transcription	HSMMtube	muscle
8	chr13:30591400-30595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:30591600-30593800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:30591600-30595400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:30591600-30595400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:30592000-30593800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr13:30592000-30594600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:30592000-30595200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:30592000-30599400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr13:30592200-30593600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:30592200-30595000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:30592200-30600600	Weak transcription	Right Atrium	heart
19	chr13:30592400-30594000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:30592600-30593600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:30592600-30593800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:30592800-30593800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:30592800-30593800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:30592800-30594800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr13:30593000-30594200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr13:30593000-30594400	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:30593000-30599000	Weak transcription	Brain Anterior Caudate	brain
28	chr13:30593200-30594000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr13:30593200-30606600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:30593400-30595200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr13:30593400-30595800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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