Variant report

Variant	rs73159360
Chromosome Location	chr13:30565201-30565202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17503526	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17503533	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17504027	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17587770	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17587798	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17588071	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17588196	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17588286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17588314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17588510	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2094054	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55708888	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55734322	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55741316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55772458	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55804174	0.82[AMR][1000 genomes]
rs55837941	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55886241	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55913576	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55922204	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55951457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56077878	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56249225	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56275431	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56399700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56409314	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60828722	0.90[EUR][1000 genomes]
rs73157198	0.81[EUR][1000 genomes]
rs73157199	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73157201	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73157202	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159303	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159304	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159310	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73159320	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159321	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73159339	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159340	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73159389	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73159392	0.90[EUR][1000 genomes]
rs73159395	0.88[EUR][1000 genomes]
rs73159397	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73159398	0.88[EUR][1000 genomes]
rs73159402	0.86[EUR][1000 genomes]
rs73161503	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73161515	0.82[AMR][1000 genomes]
rs73161517	0.82[AMR][1000 genomes]
rs73161519	0.82[AMR][1000 genomes]
rs9579516	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30565000-30565800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:30565000-30566400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:30565000-30566400	Enhancers	HSMMtube	muscle
4	chr13:30565000-30566600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:30565000-30566800	Enhancers	NH-A	brain
6	chr13:30565000-30566800	Enhancers	Osteobl	bone
7	chr13:30565000-30569000	Enhancers	NHDF-Ad	bronchial
8	chr13:30565000-30569400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:30565200-30566000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:30565200-30566400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:30565200-30566400	Enhancers	NHEK	skin
12	chr13:30565200-30566600	Enhancers	HMEC	breast
13	chr13:30565200-30566800	Enhancers	HSMM	muscle
14	chr13:30565200-30566800	Enhancers	NHLF	lung
15	chr13:30565200-30568600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:30565200-30569400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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