Variant report

Variant	rs73242046
Chromosome Location	chr7:8044011-8044012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:8006704..8009086-chr7:8043010..8045321,2	MCF-7	breast:
2	chr7:8043881..8046196-chr7:8058398..8061346,2	MCF-7	breast:
3	chr7:8009265..8011101-chr7:8042338..8044850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233108	Chromatin interaction
ENSG00000106415	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10435182	0.94[ASN][1000 genomes]
rs10435183	0.91[ASN][1000 genomes]
rs12234474	0.94[ASN][1000 genomes]
rs56747980	1.00[AMR][1000 genomes]
rs59588512	1.00[AMR][1000 genomes]
rs60275081	1.00[AMR][1000 genomes]
rs61341359	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6463757	1.00[AMR][1000 genomes]
rs6951578	0.87[AMR][1000 genomes]
rs6956039	0.87[AMR][1000 genomes]
rs6962721	0.85[AMR][1000 genomes]
rs6969971	1.00[AMR][1000 genomes]
rs73242019	1.00[AMR][1000 genomes]
rs73242021	1.00[AMR][1000 genomes]
rs73242034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73242049	1.00[AMR][1000 genomes]
rs73242054	0.96[ASN][1000 genomes]
rs73242080	0.87[AMR][1000 genomes]
rs73242082	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73242085	1.00[AMR][1000 genomes]
rs73242187	1.00[AMR][1000 genomes]
rs73242194	1.00[AMR][1000 genomes]
rs73244303	1.00[AMR][1000 genomes]
rs7783464	0.94[ASN][1000 genomes]
rs7784884	1.00[AMR][1000 genomes]
rs7792118	1.00[AMR][1000 genomes]
rs7792831	1.00[AMR][1000 genomes]
rs7793288	1.00[AMR][1000 genomes]
rs7797521	1.00[AMR][1000 genomes]
rs7798132	1.00[AMR][1000 genomes]
rs7799954	1.00[AMR][1000 genomes]
rs7799990	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7800279	1.00[AMR][1000 genomes]
rs7808790	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1796855	chr7:8042555-8047169	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8015000-8045000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:8029800-8046400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:8029800-8049000	Weak transcription	Fetal Heart	heart
4	chr7:8035200-8045000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:8036000-8044200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:8036400-8044400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:8036400-8044400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:8036400-8045000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:8036400-8046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
11	chr7:8036600-8044200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:8036600-8044600	Weak transcription	Osteobl	bone
13	chr7:8036600-8045600	Weak transcription	Liver	Liver
14	chr7:8036600-8045600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:8036600-8045800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:8036600-8045800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:8036600-8053800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:8036600-8057200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:8036600-8064400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:8036600-8064400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:8036800-8044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:8036800-8046400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:8037400-8044200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:8038000-8066000	Weak transcription	Pancreas	Pancrea
26	chr7:8038200-8045800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:8038400-8046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:8038400-8066000	Weak transcription	Spleen	Spleen
29	chr7:8039200-8044400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:8039400-8044200	Weak transcription	Thymus	Thymus
31	chr7:8039400-8045200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:8039400-8046400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:8039400-8046400	Weak transcription	Left Ventricle	heart
34	chr7:8039400-8046400	Weak transcription	Ovary	ovary
35	chr7:8040000-8046400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:8040600-8044200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:8041000-8044200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:8041000-8045400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:8041000-8045800	Weak transcription	Fetal Kidney	kidney
40	chr7:8041200-8046400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:8041400-8044400	Weak transcription	Placenta	Placenta
42	chr7:8041600-8044200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:8041600-8044400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:8041600-8044400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:8041600-8046400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:8041600-8053800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:8041600-8064400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:8041600-8095000	Weak transcription	Gastric	stomach
49	chr7:8041800-8044400	Weak transcription	Fetal Intestine Large	intestine
50	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links