Variant report

Variant	rs73242080
Chromosome Location	chr7:8064317-8064318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8063593..8066315-chr7:8067381..8070107,2	MCF-7	breast:
2	chr7:8062440..8065234-chr7:8085232..8088218,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56747980	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59588512	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60275081	0.87[AMR][1000 genomes]
rs6463757	0.87[AMR][1000 genomes]
rs6969971	0.87[AMR][1000 genomes]
rs73242019	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73242021	0.87[AMR][1000 genomes]
rs73242034	0.87[AMR][1000 genomes]
rs73242046	0.87[AMR][1000 genomes]
rs73242049	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73242082	1.00[AMR][1000 genomes]
rs73242085	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242187	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242194	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244303	0.87[AMR][1000 genomes]
rs7784884	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792118	0.87[AMR][1000 genomes]
rs7792831	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7793288	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797521	0.87[AMR][1000 genomes]
rs7798132	0.87[AMR][1000 genomes]
rs7799954	0.87[AMR][1000 genomes]
rs7799990	1.00[AMR][1000 genomes]
rs7800279	0.87[AMR][1000 genomes]
rs7808790	0.87[AMR][1000 genomes]
rs7811561	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8064400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:8036600-8064400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:8038000-8066000	Weak transcription	Pancreas	Pancrea
6	chr7:8038400-8066000	Weak transcription	Spleen	Spleen
7	chr7:8041600-8064400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:8041600-8095000	Weak transcription	Gastric	stomach
9	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:8042800-8064400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:8043600-8068400	Weak transcription	NH-A	brain
13	chr7:8043800-8064400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:8043800-8064600	Weak transcription	Small Intestine	intestine
15	chr7:8044200-8066000	Weak transcription	Lung	lung
16	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:8044800-8064400	Weak transcription	Aorta	Aorta
18	chr7:8045200-8066000	Weak transcription	Fetal Brain Male	brain
19	chr7:8046800-8064400	Weak transcription	Ovary	ovary
20	chr7:8046800-8066000	Weak transcription	Left Ventricle	heart
21	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
22	chr7:8047000-8066000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:8047200-8064400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:8047200-8065200	Weak transcription	Fetal Kidney	kidney
25	chr7:8047200-8065400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:8047200-8066000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:8047200-8066200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:8047400-8064400	Weak transcription	Fetal Brain Female	brain
29	chr7:8047400-8064400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:8047400-8066000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:8047400-8066000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:8047400-8066000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr7:8047400-8075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:8047600-8064400	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr7:8048200-8064400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:8048200-8064400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:8048400-8064400	Weak transcription	Osteobl	bone
39	chr7:8049200-8066000	Weak transcription	Fetal Heart	heart
40	chr7:8055000-8064400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:8055600-8064400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:8057200-8067600	Weak transcription	Colonic Mucosa	Colon
43	chr7:8057400-8065400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr7:8057400-8065400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr7:8058800-8069400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:8059200-8064600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:8059200-8067800	ZNF genes & repeats	GM12878-XiMat	blood
48	chr7:8059600-8064400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:8061200-8070000	Weak transcription	Stomach Mucosa	stomach
50	chr7:8061400-8064600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links