Variant report

Variant	rs7811561
Chromosome Location	chr7:8066888-8066889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8065280..8067044-chr7:8073345..8076327,2	MCF-7	breast:
2	chr7:8058670..8060171-chr7:8065220..8067372,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56747980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59003138	1.00[EUR][1000 genomes]
rs59588512	1.00[AMR][1000 genomes]
rs60275081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61341359	0.87[AMR][1000 genomes]
rs6463757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6951578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956039	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242021	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242034	1.00[AMR][1000 genomes]
rs73242046	1.00[AMR][1000 genomes]
rs73242049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242080	0.87[AMR][1000 genomes]
rs73242082	0.87[AMR][1000 genomes]
rs73242085	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674754	1.00[EUR][1000 genomes]
rs7784884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7798132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799990	0.87[AMR][1000 genomes]
rs7800279	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808790	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1793794	chr7:8064509-8078802	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:8041600-8095000	Weak transcription	Gastric	stomach
4	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:8043600-8068400	Weak transcription	NH-A	brain
7	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:8047400-8075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:8057200-8067600	Weak transcription	Colonic Mucosa	Colon
12	chr7:8058800-8069400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:8059200-8067800	ZNF genes & repeats	GM12878-XiMat	blood
14	chr7:8061200-8070000	Weak transcription	Stomach Mucosa	stomach
15	chr7:8062200-8068000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:8062800-8067600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:8063400-8067000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:8063400-8067200	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr7:8063400-8068000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:8063600-8067400	Strong transcription	Hela-S3	cervix
21	chr7:8063600-8069000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr7:8063800-8067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:8064000-8067400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:8064000-8067600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:8064000-8068000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:8064200-8067000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:8064200-8067600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr7:8064200-8067800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:8064200-8068000	ZNF genes & repeats	Brain Germinal Matrix	brain
30	chr7:8064400-8067200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:8064400-8067400	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr7:8064400-8067400	ZNF genes & repeats	Fetal Muscle Leg	muscle
33	chr7:8064400-8068000	ZNF genes & repeats	Fetal Brain Female	brain
34	chr7:8064400-8096200	Weak transcription	NHLF	lung
35	chr7:8064800-8067400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr7:8065000-8067200	Strong transcription	Fetal Thymus	thymus
37	chr7:8065000-8074400	Weak transcription	Aorta	Aorta
38	chr7:8065000-8076800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:8065000-8095000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:8065000-8108600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr7:8065400-8067000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr7:8065400-8067200	ZNF genes & repeats	Fetal Lung	lung
43	chr7:8065600-8067200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:8065800-8067000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr7:8065800-8067000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:8065800-8067200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr7:8066000-8067000	ZNF genes & repeats	Pancreas	Pancrea
48	chr7:8066000-8067200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:8066000-8067200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:8066000-8067200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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