Variant report

Variant	rs73242085
Chromosome Location	chr7:8067331-8067332
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:8058670..8060171-chr7:8065220..8067372,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56747980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59588512	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60275081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61341359	0.87[AMR][1000 genomes]
rs6463757	1.00[AMR][1000 genomes]
rs6951578	0.87[AMR][1000 genomes]
rs6956039	0.87[AMR][1000 genomes]
rs6962721	0.85[AMR][1000 genomes]
rs6969971	1.00[AMR][1000 genomes]
rs73242019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242034	1.00[AMR][1000 genomes]
rs73242046	1.00[AMR][1000 genomes]
rs73242049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242080	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242082	0.87[AMR][1000 genomes]
rs73242187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784884	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7793288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797521	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798132	1.00[AMR][1000 genomes]
rs7799954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799990	0.87[AMR][1000 genomes]
rs7800279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7808790	1.00[AMR][1000 genomes]
rs7811561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1793794	chr7:8064509-8078802	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:8041600-8095000	Weak transcription	Gastric	stomach
4	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:8043600-8068400	Weak transcription	NH-A	brain
7	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:8047400-8075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:8057200-8067600	Weak transcription	Colonic Mucosa	Colon
12	chr7:8058800-8069400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:8059200-8067800	ZNF genes & repeats	GM12878-XiMat	blood
14	chr7:8061200-8070000	Weak transcription	Stomach Mucosa	stomach
15	chr7:8062200-8068000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:8062800-8067600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:8063400-8068000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:8063600-8067400	Strong transcription	Hela-S3	cervix
19	chr7:8063600-8069000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr7:8063800-8067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:8064000-8067400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:8064000-8067600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:8064000-8068000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:8064200-8067600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr7:8064200-8067800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:8064200-8068000	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr7:8064400-8067400	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr7:8064400-8067400	ZNF genes & repeats	Fetal Muscle Leg	muscle
29	chr7:8064400-8068000	ZNF genes & repeats	Fetal Brain Female	brain
30	chr7:8064400-8096200	Weak transcription	NHLF	lung
31	chr7:8064800-8067400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr7:8065000-8074400	Weak transcription	Aorta	Aorta
33	chr7:8065000-8076800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:8065000-8095000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:8065000-8108600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:8066400-8067400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:8066400-8067800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:8066400-8068600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:8066400-8070800	Weak transcription	Dnd41	blood
40	chr7:8066400-8074200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:8066400-8074400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:8066400-8074400	Weak transcription	Primary T cells from cord blood	blood
43	chr7:8066400-8074400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:8066400-8074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:8066400-8074400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:8066400-8074600	Weak transcription	Lung	lung
47	chr7:8066400-8075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:8066400-8075200	Weak transcription	Esophagus	oesophagus
49	chr7:8066400-8075600	Weak transcription	Fetal Kidney	kidney
50	chr7:8066400-8090800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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