Variant report

Variant	rs73244303
Chromosome Location	chr7:8092604-8092605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr7:8092500-8092762	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:8092001..8094399-chr7:8094912..8097998,3	MCF-7	breast:
2	chr7:8087357..8089903-chr7:8092104..8094310,2	MCF-7	breast:
3	chr7:8012321..8014472-chr7:8092130..8094206,2	MCF-7	breast:

Variant related genes	Relation type
GLCCI1	TF binding region
ENSG00000106415	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56747980	1.00[AMR][1000 genomes]
rs59003138	1.00[EUR][1000 genomes]
rs59588512	1.00[AMR][1000 genomes]
rs60275081	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61341359	0.87[AMR][1000 genomes]
rs6463757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6951578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956039	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242034	1.00[AMR][1000 genomes]
rs73242046	1.00[AMR][1000 genomes]
rs73242049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242080	0.87[AMR][1000 genomes]
rs73242082	0.87[AMR][1000 genomes]
rs73242085	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242187	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674754	1.00[EUR][1000 genomes]
rs7784884	1.00[AMR][1000 genomes]
rs7792118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792831	1.00[AMR][1000 genomes]
rs7793288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7798132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799990	0.87[AMR][1000 genomes]
rs7800279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808790	1.00[AMR][1000 genomes]
rs7811561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8041600-8095000	Weak transcription	Gastric	stomach
2	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:8047600-8108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:8064400-8096200	Weak transcription	NHLF	lung
5	chr7:8065000-8095000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:8065000-8108600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:8066400-8096600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:8066400-8127600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:8066600-8099800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:8066600-8126000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:8066800-8095000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:8066800-8095600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:8066800-8099800	Weak transcription	Brain Anterior Caudate	brain
14	chr7:8066800-8108600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:8067000-8135400	Weak transcription	Pancreas	Pancrea
16	chr7:8067200-8095600	Weak transcription	Fetal Lung	lung
17	chr7:8067600-8095800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:8068000-8095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:8069800-8095800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:8075000-8108600	Weak transcription	Psoas Muscle	Psoas
21	chr7:8075000-8125800	Weak transcription	Lung	lung
22	chr7:8075000-8126800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:8075600-8095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:8075600-8095000	Weak transcription	Aorta	Aorta
25	chr7:8075600-8095000	Weak transcription	Ovary	ovary
26	chr7:8075600-8095200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:8075600-8101400	Weak transcription	K562	blood
28	chr7:8075600-8104400	Weak transcription	HMEC	breast
29	chr7:8075600-8105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:8075600-8113000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:8075600-8131800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:8075800-8095200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr7:8075800-8095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:8076000-8095000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:8076000-8095000	Weak transcription	Fetal Intestine Large	intestine
36	chr7:8076000-8111800	Weak transcription	Fetal Brain Male	brain
37	chr7:8076000-8124200	Weak transcription	Fetal Kidney	kidney
38	chr7:8076200-8102200	Weak transcription	Fetal Brain Female	brain
39	chr7:8076200-8108400	Weak transcription	Brain Angular Gyrus	brain
40	chr7:8076800-8095600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:8077000-8095000	Weak transcription	Adipose Nuclei	Adipose
42	chr7:8077000-8095000	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:8077200-8095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:8077200-8095000	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:8077200-8095000	Weak transcription	Left Ventricle	heart
46	chr7:8077200-8096600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:8077200-8103200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:8077200-8106800	Weak transcription	Fetal Heart	heart
49	chr7:8077400-8095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:8077400-8095600	Weak transcription	Liver	Liver

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