Variant report

Variant	rs7800279
Chromosome Location	chr7:8034708-8034709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:8007607..8011988-chr7:8034426..8038350,7	MCF-7	breast:
2	chr7:8016755..8018272-chr7:8032373..8035088,2	K562	blood:
3	chr7:8029120..8030983-chr7:8034331..8036288,2	K562	blood:
4	chr7:8031024..8033296-chr7:8034611..8036346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56747980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59003138	1.00[EUR][1000 genomes]
rs59588512	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60275081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61341359	0.87[AMR][1000 genomes]
rs6463757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6951578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6956039	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242034	1.00[AMR][1000 genomes]
rs73242046	1.00[AMR][1000 genomes]
rs73242049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73242080	0.87[AMR][1000 genomes]
rs73242082	0.87[AMR][1000 genomes]
rs73242085	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242187	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674754	1.00[EUR][1000 genomes]
rs7784884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792118	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7798132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799990	0.87[AMR][1000 genomes]
rs7808790	1.00[AMR][1000 genomes]
rs7811561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8015000-8045000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:8027600-8034800	Weak transcription	Fetal Thymus	thymus
3	chr7:8029000-8039000	Weak transcription	Thymus	Thymus
4	chr7:8029200-8043600	Weak transcription	Small Intestine	intestine
5	chr7:8029600-8035200	ZNF genes & repeats	GM12878-XiMat	blood
6	chr7:8029600-8037200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:8029800-8046400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:8029800-8049000	Weak transcription	Fetal Heart	heart
9	chr7:8032000-8035600	Weak transcription	Hela-S3	cervix
10	chr7:8033200-8035800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:8033200-8035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:8033200-8039000	Weak transcription	Dnd41	blood
13	chr7:8033400-8036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:8033400-8036200	Weak transcription	Liver	Liver
15	chr7:8033600-8043600	Weak transcription	Primary B cells from cord blood	blood
16	chr7:8034600-8036200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:8034600-8039000	Weak transcription	Primary hematopoietic stem cells	blood

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