Variant report

Variant	rs73273639
Chromosome Location	chr14:55666066-55666067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17128252	1.00[AFR][1000 genomes]
rs17128378	0.87[AFR][1000 genomes]
rs17128379	0.87[AFR][1000 genomes]
rs17128399	0.87[AFR][1000 genomes]
rs17128402	0.87[AFR][1000 genomes]
rs17128405	0.87[AFR][1000 genomes]
rs57733734	0.87[AFR][1000 genomes]
rs58709772	1.00[AFR][1000 genomes]
rs58729410	0.87[AFR][1000 genomes]
rs61160305	0.93[AFR][1000 genomes]
rs73263908	0.87[AFR][1000 genomes]
rs73263920	0.87[AFR][1000 genomes]
rs73263926	0.87[AFR][1000 genomes]
rs73263940	0.87[AFR][1000 genomes]
rs73263944	0.87[AFR][1000 genomes]
rs73271737	1.00[AFR][1000 genomes]
rs73271745	1.00[AFR][1000 genomes]
rs73281236	0.87[AFR][1000 genomes]
rs73281243	0.87[AFR][1000 genomes]
rs73281258	0.87[AFR][1000 genomes]
rs73281262	0.87[AFR][1000 genomes]
rs73281268	0.87[AFR][1000 genomes]
rs73281273	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:55662200-55667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:55662400-55667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:55662400-55667800	Weak transcription	HepG2	liver
5	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
6	chr14:55665400-55667200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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