Variant report

Variant	rs73263926
Chromosome Location	chr14:55777488-55777489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55769063..55771511-chr14:55775759..55777879,2	K562	blood:
2	chr14:55777470..55779431-chr14:55780841..55782383,2	K562	blood:
3	chr14:55775205..55778244-chr14:55782229..55785495,4	MCF-7	breast:
4	chr14:55775251..55779667-chr14:55780270..55783872,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17128252	0.87[AFR][1000 genomes]
rs17128352	0.88[AFR][1000 genomes]
rs17128378	1.00[AFR][1000 genomes]
rs17128379	1.00[AFR][1000 genomes]
rs17128399	1.00[AFR][1000 genomes]
rs17128402	1.00[AFR][1000 genomes]
rs17128405	1.00[AFR][1000 genomes]
rs57733734	1.00[AFR][1000 genomes]
rs57898410	0.88[AFR][1000 genomes]
rs58709772	0.87[AFR][1000 genomes]
rs58729410	1.00[AFR][1000 genomes]
rs73263908	1.00[AFR][1000 genomes]
rs73263920	1.00[AFR][1000 genomes]
rs73263940	1.00[AFR][1000 genomes]
rs73263944	1.00[AFR][1000 genomes]
rs73271737	0.87[AFR][1000 genomes]
rs73271745	0.87[AFR][1000 genomes]
rs73273639	0.87[AFR][1000 genomes]
rs73273656	0.88[AFR][1000 genomes]
rs73273697	0.83[AFR][1000 genomes]
rs73281229	0.88[AFR][1000 genomes]
rs73281236	1.00[AFR][1000 genomes]
rs73281243	1.00[AFR][1000 genomes]
rs73281258	1.00[AFR][1000 genomes]
rs73281262	1.00[AFR][1000 genomes]
rs73281268	1.00[AFR][1000 genomes]
rs73281273	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
2	chr14:55754800-55778800	Weak transcription	Hela-S3	cervix
3	chr14:55756400-55779000	Weak transcription	Gastric	stomach
4	chr14:55762000-55778200	Weak transcription	Placenta	Placenta
5	chr14:55765000-55779000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:55766000-55778200	Weak transcription	Thymus	Thymus
7	chr14:55766000-55778400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:55766000-55779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:55766200-55778800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:55768600-55778800	Weak transcription	NHLF	lung
11	chr14:55768600-55783800	Weak transcription	Right Ventricle	heart
12	chr14:55768800-55779000	Weak transcription	Aorta	Aorta
13	chr14:55768800-55786400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:55769400-55778800	Weak transcription	K562	blood
15	chr14:55769400-55779000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:55769400-55779200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:55769600-55779000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:55769800-55778000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:55770200-55778800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:55770200-55779000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:55770600-55778000	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:55770600-55778400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr14:55770800-55778800	Weak transcription	Fetal Stomach	stomach
24	chr14:55770800-55779400	Weak transcription	HSMMtube	muscle
25	chr14:55770800-55783800	Weak transcription	Fetal Kidney	kidney
26	chr14:55771000-55777800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:55771400-55778800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:55771400-55778800	Weak transcription	NHEK	skin
29	chr14:55771400-55779000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:55772000-55777800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:55772400-55778000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:55772400-55778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:55773200-55778000	Weak transcription	Primary T cells from cord blood	blood
34	chr14:55773600-55783000	Weak transcription	Pancreas	Pancrea
35	chr14:55773800-55777600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:55774200-55779000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:55774200-55779000	Weak transcription	Colonic Mucosa	Colon
38	chr14:55774200-55782000	Weak transcription	Fetal Lung	lung
39	chr14:55775000-55778800	Weak transcription	Esophagus	oesophagus
40	chr14:55775000-55779000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:55775000-55783000	Weak transcription	Left Ventricle	heart
42	chr14:55775200-55778600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr14:55775600-55778000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:55775600-55778200	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr14:55775600-55780400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr14:55776000-55777600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:55776000-55777600	Enhancers	Small Intestine	intestine
48	chr14:55776000-55778200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:55776200-55778400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr14:55776200-55778400	Enhancers	Stomach Mucosa	stomach

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