Variant report

Variant	rs73263920
Chromosome Location	chr14:55772627-55772628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17128252	0.87[AFR][1000 genomes]
rs17128352	0.88[AFR][1000 genomes]
rs17128378	1.00[AFR][1000 genomes]
rs17128379	1.00[AFR][1000 genomes]
rs17128399	1.00[AFR][1000 genomes]
rs17128402	1.00[AFR][1000 genomes]
rs17128405	1.00[AFR][1000 genomes]
rs57733734	1.00[AFR][1000 genomes]
rs57898410	0.88[AFR][1000 genomes]
rs58709772	0.87[AFR][1000 genomes]
rs58729410	1.00[AFR][1000 genomes]
rs73263908	1.00[AFR][1000 genomes]
rs73263926	1.00[AFR][1000 genomes]
rs73263940	1.00[AFR][1000 genomes]
rs73263944	1.00[AFR][1000 genomes]
rs73271737	0.87[AFR][1000 genomes]
rs73271745	0.87[AFR][1000 genomes]
rs73273639	0.87[AFR][1000 genomes]
rs73273656	0.88[AFR][1000 genomes]
rs73273697	0.83[AFR][1000 genomes]
rs73281229	0.88[AFR][1000 genomes]
rs73281236	1.00[AFR][1000 genomes]
rs73281243	1.00[AFR][1000 genomes]
rs73281258	1.00[AFR][1000 genomes]
rs73281262	1.00[AFR][1000 genomes]
rs73281268	1.00[AFR][1000 genomes]
rs73281273	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:55745000-55774000	Weak transcription	Liver	Liver
3	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
4	chr14:55754800-55778800	Weak transcription	Hela-S3	cervix
5	chr14:55755000-55774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:55756400-55779000	Weak transcription	Gastric	stomach
7	chr14:55761200-55773200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:55762000-55778200	Weak transcription	Placenta	Placenta
9	chr14:55764400-55773800	Weak transcription	Fetal Lung	lung
10	chr14:55764800-55773400	Weak transcription	HUVEC	blood vessel
11	chr14:55765000-55779000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:55765600-55774600	Weak transcription	Lung	lung
13	chr14:55765800-55776800	Weak transcription	Dnd41	blood
14	chr14:55766000-55773800	Weak transcription	Adipose Nuclei	Adipose
15	chr14:55766000-55777200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:55766000-55778200	Weak transcription	Thymus	Thymus
17	chr14:55766000-55778400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:55766000-55779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:55766200-55776600	Weak transcription	Fetal Intestine Small	intestine
20	chr14:55766200-55778800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:55768600-55778800	Weak transcription	NHLF	lung
22	chr14:55768600-55783800	Weak transcription	Right Ventricle	heart
23	chr14:55768800-55773200	Weak transcription	Psoas Muscle	Psoas
24	chr14:55768800-55773800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:55768800-55776400	Weak transcription	NHDF-Ad	bronchial
26	chr14:55768800-55779000	Weak transcription	Aorta	Aorta
27	chr14:55768800-55786400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:55769000-55772800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:55769000-55772800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:55769000-55776600	Weak transcription	Osteobl	bone
31	chr14:55769000-55777200	Weak transcription	A549	lung
32	chr14:55769400-55773200	Weak transcription	Esophagus	oesophagus
33	chr14:55769400-55773200	Weak transcription	Left Ventricle	heart
34	chr14:55769400-55773200	Weak transcription	Pancreas	Pancrea
35	chr14:55769400-55773800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:55769400-55773800	Weak transcription	Right Atrium	heart
37	chr14:55769400-55773800	Weak transcription	Small Intestine	intestine
38	chr14:55769400-55774000	Weak transcription	NH-A	brain
39	chr14:55769400-55778800	Weak transcription	K562	blood
40	chr14:55769400-55779000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:55769400-55779200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:55769600-55773600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:55769600-55773600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:55769600-55779000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:55769800-55773800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:55769800-55774000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:55769800-55778000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:55770200-55772800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:55770200-55773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:55770200-55773800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links