Variant report
| Variant | rs73273697 |
|---|---|
| Chromosome Location | chr14:55709543-55709544 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr14:55709384-55709806 | MCF-7 | breast: | n/a | n/a |
| 2 | CEBPB | chr14:55709429-55709573 | K562 | blood: | n/a | chr14:55709515-55709526 |
| 3 | CEBPB | chr14:55709343-55709711 | MCF-7 | breast: | n/a | chr14:55709515-55709526 |
| 4 | GATA3 | chr14:55709356-55709600 | MCF-7 | breast: | n/a | n/a |
| 5 | GATA3 | chr14:55709322-55709583 | T-47D | breast: | n/a | n/a |
| 6 | CEBPB | chr14:55709360-55709584 | Hela-S3 | cervix: | n/a | chr14:55709515-55709526 |
| 7 | GATA3 | chr14:55709039-55709786 | MCF-7 | breast: | n/a | chr14:55709282-55709298 chr14:55709213-55709223 chr14:55709280-55709301 |
| 8 | CEBPB | chr14:55709261-55709790 | MCF-7 | breast: | n/a | chr14:55709515-55709526 |
| 9 | GATA3 | chr14:55709204-55709810 | MCF-7 | breast: | n/a | chr14:55709282-55709298 chr14:55709213-55709223 chr14:55709280-55709301 |
| 10 | CEBPB | chr14:55709389-55709645 | HepG2 | liver: | n/a | chr14:55709515-55709526 |
| 11 | TCF7L2 | chr14:55709318-55709594 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271180 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17128352 | 0.94[AFR][1000 genomes] |
| rs17128378 | 0.83[AFR][1000 genomes] |
| rs17128379 | 0.83[AFR][1000 genomes] |
| rs17128399 | 0.83[AFR][1000 genomes] |
| rs17128402 | 0.83[AFR][1000 genomes] |
| rs17128405 | 0.83[AFR][1000 genomes] |
| rs57733734 | 0.83[AFR][1000 genomes] |
| rs57898410 | 0.94[AFR][1000 genomes] |
| rs58729410 | 0.83[AFR][1000 genomes] |
| rs73263908 | 0.83[AFR][1000 genomes] |
| rs73263920 | 0.83[AFR][1000 genomes] |
| rs73263926 | 0.83[AFR][1000 genomes] |
| rs73263940 | 0.83[AFR][1000 genomes] |
| rs73263944 | 0.83[AFR][1000 genomes] |
| rs73273656 | 0.94[AFR][1000 genomes] |
| rs73281229 | 0.94[AFR][1000 genomes] |
| rs73281236 | 0.83[AFR][1000 genomes] |
| rs73281243 | 0.83[AFR][1000 genomes] |
| rs73281258 | 0.83[AFR][1000 genomes] |
| rs73281262 | 0.83[AFR][1000 genomes] |
| rs73281268 | 0.83[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:55708400-55709600 | Weak transcription | Psoas Muscle | Psoas |
