Variant report

Variant	rs73305567
Chromosome Location	chr20:23107316-23107317
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23105413..23107552-chr20:23159018..23161237,2	K562	blood:
2	chr20:23088338..23089890-chr20:23107180..23109300,2	MCF-7	breast:
3	chr20:23106418..23109174-chr20:23126935..23129451,2	K562	blood:
4	chr20:23103623..23110911-chr20:23111294..23114699,12	K562	blood:
5	chr20:23099426..23103463-chr20:23105068..23107847,3	K562	blood:
6	chr20:23095719..23097726-chr20:23106686..23108284,2	K562	blood:

Variant related genes	Relation type
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16984879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AMR][1000 genomes]
rs16984898	1.00[AMR][1000 genomes]
rs16984902	1.00[AMR][1000 genomes]
rs16984958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs56840583	1.00[AMR][1000 genomes]
rs57380874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61060770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AMR][1000 genomes]
rs73311922	1.00[AMR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23097600-23110200	Weak transcription	Pancreas	Pancrea
3	chr20:23100200-23111200	Enhancers	Fetal Thymus	thymus
4	chr20:23101200-23109400	Weak transcription	Liver	Liver
5	chr20:23101800-23109200	Weak transcription	Right Ventricle	heart
6	chr20:23102000-23114000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr20:23103200-23109800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr20:23104000-23108000	Enhancers	Fetal Muscle Trunk	muscle
9	chr20:23104600-23111600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr20:23104800-23107400	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:23105000-23109800	Enhancers	Brain Hippocampus Middle	brain
12	chr20:23105200-23109200	Weak transcription	Fetal Lung	lung
13	chr20:23105200-23111000	Enhancers	Fetal Muscle Leg	muscle
14	chr20:23105400-23107600	Enhancers	K562	blood
15	chr20:23105400-23107800	Flanking Active TSS	Dnd41	blood
16	chr20:23105600-23108600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr20:23105800-23107400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr20:23105800-23107400	Enhancers	Fetal Heart	heart
19	chr20:23105800-23107600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr20:23105800-23107600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr20:23105800-23107600	Enhancers	GM12878-XiMat	blood
22	chr20:23105800-23107600	Enhancers	NHLF	lung
23	chr20:23105800-23108200	Enhancers	Psoas Muscle	Psoas
24	chr20:23105800-23108400	Enhancers	Lung	lung
25	chr20:23105800-23108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr20:23105800-23110000	Enhancers	Primary B cells from cord blood	blood
27	chr20:23105800-23110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr20:23105800-23111000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr20:23106000-23107400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr20:23106000-23107600	Enhancers	Left Ventricle	heart
31	chr20:23106000-23108000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr20:23106000-23108000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr20:23106000-23112000	Enhancers	Adipose Nuclei	Adipose
34	chr20:23106200-23110200	Weak transcription	Fetal Intestine Small	intestine
35	chr20:23106400-23107800	Enhancers	Primary B cells from peripheral blood	blood
36	chr20:23106400-23108200	Enhancers	Primary hematopoietic stem cells	blood
37	chr20:23106400-23108400	Enhancers	Fetal Stomach	stomach
38	chr20:23106400-23108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr20:23106400-23109600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr20:23106600-23107600	Weak transcription	Brain Anterior Caudate	brain
41	chr20:23106600-23107800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr20:23106600-23108200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr20:23106600-23109800	Weak transcription	Right Atrium	heart
44	chr20:23106600-23111000	Enhancers	Spleen	Spleen
45	chr20:23106600-23112600	Weak transcription	Fetal Intestine Large	intestine
46	chr20:23106800-23107600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr20:23106800-23109800	Weak transcription	Colonic Mucosa	Colon
48	chr20:23106800-23110800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr20:23106800-23114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links