Variant report

Variant	rs4289261
Chromosome Location	chr20:23039537-23039538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23038451..23039596-chr20:23181254..23182191,4	MCF-7	breast:
2	chr20:23033798..23035725-chr20:23039013..23041466,2	MCF-7	breast:
3	chr20:23037834..23043617-chr20:23045683..23049258,6	MCF-7	breast:
4	chr20:23038702..23039550-chr20:23145856..23146435,3	MCF-7	breast:
5	chr20:23030229..23033770-chr20:23036359..23041230,6	K562	blood:
6	chr20:23038571..23039568-chr20:23300787..23301400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984778	1.00[EUR][1000 genomes]
rs16984879	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AFR][1000 genomes]
rs16984898	1.00[AFR][1000 genomes]
rs16984902	1.00[AFR][1000 genomes]
rs16984958	1.00[EUR][1000 genomes]
rs57380874	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58224951	1.00[EUR][1000 genomes]
rs59750797	1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61044656	1.00[EUR][1000 genomes]
rs61060770	1.00[EUR][1000 genomes]
rs61201127	1.00[EUR][1000 genomes]
rs7271422	1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73297706	1.00[EUR][1000 genomes]
rs73305567	1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309886	1.00[AFR][1000 genomes]
rs73309887	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73309897	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73309899	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73311903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AFR][1000 genomes]
rs73311916	1.00[AFR][1000 genomes]
rs73311920	1.00[AFR][1000 genomes]
rs73311922	1.00[AFR][1000 genomes]
rs73311937	1.00[AFR][1000 genomes]
rs73311941	1.00[AFR][1000 genomes]
rs73312001	1.00[AFR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23032600-23041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23032800-23041400	Weak transcription	Spleen	Spleen
3	chr20:23033400-23040200	Weak transcription	Placenta	Placenta
4	chr20:23038400-23046600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links