Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22890038..22892019-chr20:22898418..22900127,2	MCF-7	breast:
2	chr20:22891140..22894214-chr20:22897238..22900519,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1319395	1.00[EUR][1000 genomes]
rs1331065	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1331069	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984778	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984879	1.00[EUR][1000 genomes]
rs16984883	1.00[EUR][1000 genomes]
rs16984886	1.00[EUR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs57380874	1.00[EUR][1000 genomes]
rs57433215	1.00[EUR][1000 genomes]
rs58224951	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59750797	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61044656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61201127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7273871	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[EUR][1000 genomes]
rs73311903	1.00[EUR][1000 genomes]
rs73311905	1.00[EUR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22891400-22892200	Enhancers	Brain Anterior Caudate	brain
2	chr20:22891400-22892200	Enhancers	K562	blood
3	chr20:22891600-22892000	Enhancers	Brain Hippocampus Middle	brain

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