Variant report

Variant	rs73311903
Chromosome Location	chr20:23045342-23045343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23044407..23046627-chr20:23047753..23050587,2	K562	blood:
2	chr20:23041745..23043295-chr20:23045027..23046542,2	K562	blood:
3	chr20:23041795..23043675-chr20:23045042..23047650,2	K562	blood:
4	chr20:23044091..23045907-chr20:23047694..23050587,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984778	1.00[EUR][1000 genomes]
rs16984879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289261	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56840583	1.00[AMR][1000 genomes]
rs57380874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58224951	1.00[EUR][1000 genomes]
rs59750797	1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61044656	1.00[EUR][1000 genomes]
rs61060770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61201127	1.00[EUR][1000 genomes]
rs7271422	1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73297706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309886	1.00[AFR][1000 genomes]
rs73309887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309897	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73309899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311916	1.00[AFR][1000 genomes]
rs73311920	1.00[AFR][1000 genomes]
rs73311922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311937	1.00[AFR][1000 genomes]
rs73311941	1.00[AFR][1000 genomes]
rs73312001	1.00[AFR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23038400-23046600	Enhancers	Fetal Lung	lung
2	chr20:23039800-23046000	Enhancers	Fetal Muscle Leg	muscle
3	chr20:23040200-23046800	Enhancers	Fetal Stomach	stomach
4	chr20:23042000-23046000	Weak transcription	Stomach Mucosa	stomach
5	chr20:23042200-23046200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:23043200-23045400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:23043200-23045600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:23043200-23046400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:23043400-23063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:23043600-23053000	Weak transcription	Ovary	ovary
11	chr20:23043600-23054000	Weak transcription	Lung	lung
12	chr20:23043600-23062200	Weak transcription	Placenta	Placenta
13	chr20:23043600-23066600	Weak transcription	Aorta	Aorta
14	chr20:23043800-23045400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr20:23043800-23046200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr20:23043800-23055200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr20:23044000-23045800	Weak transcription	GM12878-XiMat	blood
18	chr20:23044200-23047200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr20:23044800-23053000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr20:23045000-23051800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr20:23045200-23045400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr20:23045200-23045400	Enhancers	Small Intestine	intestine

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