Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:22904934..22908000-chr20:22908033..22911614,4	K562	blood:
2	chr20:22899025..22900609-chr20:22907012..22909137,2	K562	blood:
3	chr20:22904934..22907268-chr20:22908600..22911614,3	K562	blood:
4	chr20:22904069..22907356-chr20:23028519..23031490,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1331065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984778	1.00[EUR][1000 genomes]
rs16984879	1.00[EUR][1000 genomes]
rs16984883	1.00[EUR][1000 genomes]
rs16984886	1.00[EUR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs57380874	1.00[EUR][1000 genomes]
rs58224951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61044656	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61060770	1.00[EUR][1000 genomes]
rs61201127	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7271422	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7273871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[EUR][1000 genomes]
rs73311903	1.00[EUR][1000 genomes]
rs73311905	1.00[EUR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22903000-22909200	Enhancers	K562	blood
2	chr20:22903200-22908200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:22905800-22912200	Weak transcription	A549	lung
4	chr20:22906000-22908200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:22906600-22918200	Weak transcription	Ovary	ovary
6	chr20:22907000-22912400	Weak transcription	HSMMtube	muscle

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