Variant report

Variant	rs61060770
Chromosome Location	chr20:23077001-23077002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23073935..23077646-chr20:23127330..23130238,3	K562	blood:
2	chr20:23073015..23074708-chr20:23076169..23077685,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AMR][1000 genomes]
rs16984898	1.00[AMR][1000 genomes]
rs16984902	1.00[AMR][1000 genomes]
rs16984958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs56840583	1.00[AMR][1000 genomes]
rs57380874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58224951	1.00[EUR][1000 genomes]
rs59750797	1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61044656	1.00[EUR][1000 genomes]
rs61201127	1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73297706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AMR][1000 genomes]
rs73311922	1.00[AMR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23069000-23080400	Weak transcription	Fetal Thymus	thymus
2	chr20:23072400-23077600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23073000-23087000	Weak transcription	Gastric	stomach
5	chr20:23073800-23079400	Enhancers	Esophagus	oesophagus
6	chr20:23073800-23085800	Weak transcription	Right Ventricle	heart
7	chr20:23074600-23080400	Weak transcription	Spleen	Spleen
8	chr20:23074600-23082200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr20:23074600-23083000	Weak transcription	Right Atrium	heart
10	chr20:23075000-23077200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr20:23075000-23079000	Enhancers	HMEC	breast
12	chr20:23075000-23083000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr20:23075000-23085600	Weak transcription	Fetal Lung	lung
14	chr20:23075200-23077400	Enhancers	NHEK	skin
15	chr20:23075200-23078800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr20:23076200-23077200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
17	chr20:23076200-23077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:23076200-23077400	Weak transcription	Placenta	Placenta
19	chr20:23076200-23077600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:23076200-23079200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr20:23076600-23077600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr20:23076600-23082400	Weak transcription	HUVEC	blood vessel
23	chr20:23076800-23079200	Enhancers	Lung	lung

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