Variant report

Variant	rs16984958
Chromosome Location	chr20:23089955-23089956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23087953..23091765-chr20:23104298..23106744,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AMR][1000 genomes]
rs16984898	1.00[AMR][1000 genomes]
rs16984902	1.00[AMR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs56840583	1.00[AMR][1000 genomes]
rs57380874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61060770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73297706	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AMR][1000 genomes]
rs73311922	1.00[AMR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23085800-23114600	Enhancers	Placenta	Placenta
3	chr20:23086200-23092800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr20:23086200-23094200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:23086400-23091400	Weak transcription	Fetal Thymus	thymus
6	chr20:23087000-23093800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:23087600-23091200	Weak transcription	Dnd41	blood
8	chr20:23087600-23092000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr20:23088000-23100000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr20:23088200-23094000	Weak transcription	Primary B cells from cord blood	blood
11	chr20:23088200-23094800	Weak transcription	Right Atrium	heart
12	chr20:23088200-23095000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr20:23088200-23096800	Weak transcription	Esophagus	oesophagus
14	chr20:23088400-23093600	Weak transcription	Adipose Nuclei	Adipose
15	chr20:23088400-23094400	Weak transcription	Left Ventricle	heart
16	chr20:23088600-23090000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr20:23088800-23093400	Weak transcription	Fetal Muscle Leg	muscle
18	chr20:23089400-23090000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr20:23089600-23090000	Enhancers	Fetal Stomach	stomach
20	chr20:23089600-23090000	Enhancers	Lung	lung
21	chr20:23089600-23090200	Enhancers	Ovary	ovary
22	chr20:23089600-23090400	Enhancers	Spleen	Spleen
23	chr20:23089600-23094600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links