Variant report
| Variant | rs1331065 |
|---|---|
| Chromosome Location | chr20:22918621-22918622 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1331069 | 1.00[EUR][1000 genomes] |
| rs16984778 | 1.00[EUR][1000 genomes] |
| rs16984879 | 1.00[EUR][1000 genomes] |
| rs16984883 | 1.00[EUR][1000 genomes] |
| rs16984886 | 1.00[EUR][1000 genomes] |
| rs16984958 | 1.00[EUR][1000 genomes] |
| rs4289261 | 1.00[EUR][1000 genomes] |
| rs57380874 | 1.00[EUR][1000 genomes] |
| rs58224951 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59750797 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61044656 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61060770 | 1.00[EUR][1000 genomes] |
| rs61201127 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7271422 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7273871 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297706 | 1.00[EUR][1000 genomes] |
| rs73309806 | 1.00[EUR][1000 genomes] |
| rs73309887 | 1.00[EUR][1000 genomes] |
| rs73309897 | 1.00[EUR][1000 genomes] |
| rs73309899 | 1.00[EUR][1000 genomes] |
| rs73311903 | 1.00[EUR][1000 genomes] |
| rs73311905 | 1.00[EUR][1000 genomes] |
| rs73313506 | 1.00[EUR][1000 genomes] |
| rs73313513 | 1.00[EUR][1000 genomes] |
| rs73313534 | 1.00[EUR][1000 genomes] |
| rs73313539 | 1.00[EUR][1000 genomes] |
| rs844810 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv912816 | chr20:22757960-23062927 | Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22918200-22921400 | Enhancers | Ovary | ovary |
| 2 | chr20:22918200-22921800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
