Variant report

Variant	rs16984778
Chromosome Location	chr20:22885510-22885511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1319395	1.00[EUR][1000 genomes]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984879	1.00[EUR][1000 genomes]
rs16984883	1.00[EUR][1000 genomes]
rs16984886	1.00[EUR][1000 genomes]
rs4289261	1.00[EUR][1000 genomes]
rs57380874	1.00[EUR][1000 genomes]
rs57433215	1.00[EUR][1000 genomes]
rs58224951	1.00[EUR][1000 genomes]
rs59750797	1.00[EUR][1000 genomes]
rs61044656	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61201127	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7271422	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309887	1.00[EUR][1000 genomes]
rs73309897	1.00[EUR][1000 genomes]
rs73309899	1.00[EUR][1000 genomes]
rs73311903	1.00[EUR][1000 genomes]
rs73311905	1.00[EUR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22884400-22887600	Enhancers	NHDF-Ad	bronchial
2	chr20:22885200-22885600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:22885400-22885800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr20:22885400-22885800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr20:22885400-22885800	Enhancers	HUVEC	blood vessel
6	chr20:22885400-22886000	Enhancers	Right Ventricle	heart
7	chr20:22885400-22886400	Enhancers	HSMM	muscle
8	chr20:22885400-22886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr20:22885400-22886800	Enhancers	Ovary	ovary
10	chr20:22885400-22887000	Enhancers	HSMMtube	muscle
11	chr20:22885400-22887600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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