Variant report

Variant	rs73309887
Chromosome Location	chr20:23033662-23033663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr20:23033627-23033952	K562	blood:	n/a	n/a
2	UBTF	chr20:23033551-23033798	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23031576..23035125-chr20:23112541..23115430,6	K562	blood:
2	chr20:23031306..23034005-chr20:23046124..23048629,2	MCF-7	breast:
3	chr20:23033213..23035257-chr20:23037224..23038817,2	MCF-7	breast:
4	chr20:23032271..23034692-chr20:23112541..23114516,2	K562	blood:
5	chr20:23027006..23030975-chr20:23031507..23034254,5	MCF-7	breast:
6	chr20:23032699..23035331-chr20:23059587..23061154,2	MCF-7	breast:
7	chr20:23031846..23034845-chr20:23202722..23206110,3	K562	blood:
8	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-8	chr20:23030380-23035547	NONHSAT079029

No data

Variant related genes	Relation type
THBD	TF binding region
ENSG00000178726	Chromatin interaction
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1331065	1.00[EUR][1000 genomes]
rs1331069	1.00[EUR][1000 genomes]
rs16984778	1.00[EUR][1000 genomes]
rs16984879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16984891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289261	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56840583	1.00[AMR][1000 genomes]
rs57380874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58224951	1.00[EUR][1000 genomes]
rs59750797	1.00[EUR][1000 genomes]
rs6048583	1.00[EUR][1000 genomes]
rs61044656	1.00[EUR][1000 genomes]
rs61060770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61201127	1.00[EUR][1000 genomes]
rs7271422	1.00[EUR][1000 genomes]
rs7273871	1.00[EUR][1000 genomes]
rs73297706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309806	1.00[EUR][1000 genomes]
rs73309886	1.00[AFR][1000 genomes]
rs73309897	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73309899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311916	1.00[AFR][1000 genomes]
rs73311920	1.00[AFR][1000 genomes]
rs73311922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311937	1.00[AFR][1000 genomes]
rs73311941	1.00[AFR][1000 genomes]
rs73312001	1.00[AFR][1000 genomes]
rs73313506	1.00[EUR][1000 genomes]
rs73313513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73313534	1.00[EUR][1000 genomes]
rs73313539	1.00[EUR][1000 genomes]
rs844810	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23032400-23033800	Weak transcription	Gastric	stomach
2	chr20:23032400-23034000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr20:23032600-23041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:23032800-23034400	Enhancers	K562	blood
5	chr20:23032800-23041400	Weak transcription	Spleen	Spleen
6	chr20:23033200-23033800	Weak transcription	Psoas Muscle	Psoas
7	chr20:23033400-23040200	Weak transcription	Placenta	Placenta
8	chr20:23033600-23033800	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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