Variant report
| Variant | rs61044656 |
|---|---|
| Chromosome Location | chr20:22895697-22895698 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:22893229..22896423-chr20:22899528..22902677,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1331065 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1331069 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16984778 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16984879 | 1.00[EUR][1000 genomes] |
| rs16984883 | 1.00[EUR][1000 genomes] |
| rs16984886 | 1.00[EUR][1000 genomes] |
| rs4289261 | 1.00[EUR][1000 genomes] |
| rs57380874 | 1.00[EUR][1000 genomes] |
| rs58224951 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59750797 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61060770 | 1.00[EUR][1000 genomes] |
| rs61201127 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7271422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7273871 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309806 | 1.00[EUR][1000 genomes] |
| rs73309887 | 1.00[EUR][1000 genomes] |
| rs73309897 | 1.00[EUR][1000 genomes] |
| rs73309899 | 1.00[EUR][1000 genomes] |
| rs73311903 | 1.00[EUR][1000 genomes] |
| rs73311905 | 1.00[EUR][1000 genomes] |
| rs73313506 | 1.00[EUR][1000 genomes] |
| rs73313513 | 1.00[EUR][1000 genomes] |
| rs73313534 | 1.00[EUR][1000 genomes] |
| rs844810 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv912816 | chr20:22757960-23062927 | Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv510782 | chr20:22806573-22907739 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22894800-22895800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr20:22894800-22895800 | Enhancers | K562 | blood |
