Variant report

Variant	rs73386502
Chromosome Location	chr14:84768547-84768548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17119875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41324950	0.82[AFR][1000 genomes]
rs56935059	0.84[AFR][1000 genomes]
rs57013094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58718562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59400041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60913366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60939651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61615743	0.84[AFR][1000 genomes]
rs72705243	0.94[AFR][1000 genomes]
rs73384941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384944	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384955	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386435	1.00[AFR][1000 genomes]
rs73386438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386450	1.00[AMR][1000 genomes]
rs73386453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386459	0.84[AFR][1000 genomes]
rs73386461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386488	0.98[AFR][1000 genomes]
rs73386491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386495	1.00[AFR][1000 genomes]
rs73386499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388313	1.00[AFR][1000 genomes]
rs73388315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388321	1.00[AFR][1000 genomes]
rs73388324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84765400-84769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:84766000-84769000	Weak transcription	Esophagus	oesophagus
3	chr14:84768200-84768600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:84768200-84768800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:84768400-84768600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:84768400-84768600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links