Variant report

Variant	rs73388307
Chromosome Location	chr14:84769870-84769871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17119875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56935059	0.82[AFR][1000 genomes]
rs57013094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58718562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59400041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60913366	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60939651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61615743	0.82[AFR][1000 genomes]
rs72705243	0.92[AFR][1000 genomes]
rs73384941	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386435	0.98[AFR][1000 genomes]
rs73386438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386450	1.00[AMR][1000 genomes]
rs73386453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386459	0.82[AFR][1000 genomes]
rs73386461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386481	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386488	0.96[AFR][1000 genomes]
rs73386491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386495	0.98[AFR][1000 genomes]
rs73386499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388313	0.98[AFR][1000 genomes]
rs73388315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388321	0.98[AFR][1000 genomes]
rs73388324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84768600-84770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:84769800-84772600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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