Variant report

Variant	rs73429933
Chromosome Location	chr7:119904392-119904393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119900140..119902051-chr7:119902421..119904871,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517058	1.00[AMR][1000 genomes]
rs58770951	1.00[AMR][1000 genomes]
rs58972504	1.00[AMR][1000 genomes]
rs59728669	1.00[AMR][1000 genomes]
rs60029532	1.00[AMR][1000 genomes]
rs73427922	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427928	1.00[AMR][1000 genomes]
rs73427955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429955	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429956	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429957	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429961	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429963	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429971	1.00[AMR][1000 genomes]
rs73429973	1.00[AMR][1000 genomes]
rs73429976	1.00[AMR][1000 genomes]
rs73429978	1.00[AMR][1000 genomes]
rs73429979	1.00[AMR][1000 genomes]
rs73429980	1.00[AMR][1000 genomes]
rs73429983	1.00[AMR][1000 genomes]
rs73429987	1.00[AMR][1000 genomes]
rs73429988	1.00[AMR][1000 genomes]
rs73429990	1.00[AMR][1000 genomes]
rs73429993	1.00[AMR][1000 genomes]
rs73429997	1.00[AMR][1000 genomes]
rs73429998	1.00[AMR][1000 genomes]
rs73429999	1.00[AMR][1000 genomes]
rs73430001	1.00[AMR][1000 genomes]
rs73431904	1.00[AMR][1000 genomes]
rs73431905	1.00[AMR][1000 genomes]
rs73431906	1.00[AMR][1000 genomes]
rs73431910	1.00[AMR][1000 genomes]
rs73431914	1.00[AMR][1000 genomes]
rs73431924	1.00[AMR][1000 genomes]
rs73431928	1.00[AMR][1000 genomes]
rs73431929	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119898200-119906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:119904200-119912000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links