Variant report

Variant	rs73431910
Chromosome Location	chr7:119960840-119960841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016912	1.00[AMR][1000 genomes]
rs2158709	1.00[AMR][1000 genomes]
rs4517058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58972504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59728669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60029532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427922	1.00[AMR][1000 genomes]
rs73427928	1.00[AMR][1000 genomes]
rs73427955	1.00[AMR][1000 genomes]
rs73427979	1.00[AMR][1000 genomes]
rs73427998	1.00[AMR][1000 genomes]
rs73429904	1.00[AMR][1000 genomes]
rs73429907	1.00[AMR][1000 genomes]
rs73429931	1.00[AMR][1000 genomes]
rs73429933	1.00[AMR][1000 genomes]
rs73429935	1.00[AMR][1000 genomes]
rs73429941	1.00[AMR][1000 genomes]
rs73429951	1.00[AMR][1000 genomes]
rs73429955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429957	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429961	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429988	1.00[AMR][1000 genomes]
rs73429990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429998	1.00[AMR][1000 genomes]
rs73429999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73430001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431905	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431924	1.00[AMR][1000 genomes]
rs73431928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119960400-119961000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:119960400-119961000	Active TSS	Brain Substantia Nigra	brain
4	chr7:119960400-119961400	Enhancers	HUVEC	blood vessel
5	chr7:119960400-119962000	ZNF genes & repeats	GM12878-XiMat	blood
6	chr7:119960600-119961200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:119960600-119961200	Enhancers	Cortex derived primary cultured neurospheres	brain

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