Variant report

Variant	rs73429955
Chromosome Location	chr7:119914316-119914317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119881073..119883750-chr7:119914172..119916717,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016912	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158709	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58972504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59728669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60029532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427922	1.00[AMR][1000 genomes]
rs73427928	1.00[AMR][1000 genomes]
rs73427955	1.00[AMR][1000 genomes]
rs73427979	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427998	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429904	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429907	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429931	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429933	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429935	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429951	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429983	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429988	1.00[AMR][1000 genomes]
rs73429990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429993	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429998	1.00[AMR][1000 genomes]
rs73429999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73430001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431904	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431905	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431910	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431924	1.00[AMR][1000 genomes]
rs73431928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119911400-119914800	Active TSS	Brain Anterior Caudate	brain
2	chr7:119911600-119914400	Active TSS	Brain Angular Gyrus	brain
3	chr7:119912000-119914400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:119912000-119914600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr7:119912000-119914600	Active TSS	Fetal Brain Male	brain
6	chr7:119912000-119914600	Active TSS	GM12878-XiMat	blood
7	chr7:119912000-119914800	Active TSS	Brain Substantia Nigra	brain
8	chr7:119912200-119914400	Active TSS	Brain Hippocampus Middle	brain
9	chr7:119912200-119914600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:119912200-119914600	Active TSS	Ovary	ovary
11	chr7:119912200-119914800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:119912400-119914400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr7:119912400-119914400	Active TSS	Colon Smooth Muscle	Colon
14	chr7:119912400-119914600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:119912400-119914600	Active TSS	Brain Cingulate Gyrus	brain
16	chr7:119912600-119914400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr7:119912600-119914400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:119912600-119914600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr7:119912600-119914600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr7:119912600-119915000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr7:119912800-119914800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr7:119913000-119914400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:119913000-119914600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:119913800-119914800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
25	chr7:119914000-119914400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:119914000-119914400	Flanking Active TSS	Fetal Brain Female	brain
27	chr7:119914000-119914400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr7:119914000-119914400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
29	chr7:119914000-119914400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
30	chr7:119914000-119914600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr7:119914000-119914600	Weak transcription	Gastric	stomach
32	chr7:119914200-119914400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:119914200-119914400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr7:119914200-119914400	Active TSS	Adipose Nuclei	Adipose
35	chr7:119914200-119914400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr7:119914200-119914600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr7:119914200-119914600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr7:119914200-119914600	Bivalent Enhancer	Fetal Stomach	stomach
39	chr7:119914200-119916000	Weak transcription	Right Atrium	heart
40	chr7:119914200-119916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links