Variant report

Variant	rs73429956
Chromosome Location	chr7:119920693-119920694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119915799..119917690-chr7:119919772..119921442,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016912	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158709	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4517058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58972504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59728669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60029532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427922	1.00[AMR][1000 genomes]
rs73427928	1.00[AMR][1000 genomes]
rs73427955	1.00[AMR][1000 genomes]
rs73427979	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427998	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429904	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429907	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429931	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429933	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429935	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429951	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429983	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429988	1.00[AMR][1000 genomes]
rs73429990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429993	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429998	1.00[AMR][1000 genomes]
rs73429999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73430001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431904	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431905	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431910	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431924	1.00[AMR][1000 genomes]
rs73431928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119914600-119921000	Weak transcription	Ovary	ovary
2	chr7:119916200-119922400	Active TSS	GM12878-XiMat	blood
3	chr7:119920200-119921400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:119920600-119921000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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