Variant report

Variant	rs73427928
Chromosome Location	chr7:119832090-119832091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1016912	1.00[AMR][1000 genomes]
rs2158709	1.00[AMR][1000 genomes]
rs4517058	1.00[AMR][1000 genomes]
rs58770951	1.00[AMR][1000 genomes]
rs58972504	1.00[AMR][1000 genomes]
rs59728669	1.00[AMR][1000 genomes]
rs60029532	1.00[AMR][1000 genomes]
rs73427922	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427979	1.00[AMR][1000 genomes]
rs73427998	1.00[AMR][1000 genomes]
rs73429904	1.00[AMR][1000 genomes]
rs73429907	1.00[AMR][1000 genomes]
rs73429931	1.00[AMR][1000 genomes]
rs73429933	1.00[AMR][1000 genomes]
rs73429935	1.00[AMR][1000 genomes]
rs73429941	1.00[AMR][1000 genomes]
rs73429951	1.00[AMR][1000 genomes]
rs73429955	1.00[AMR][1000 genomes]
rs73429956	1.00[AMR][1000 genomes]
rs73429957	1.00[AMR][1000 genomes]
rs73429961	1.00[AMR][1000 genomes]
rs73429963	1.00[AMR][1000 genomes]
rs73429971	1.00[AMR][1000 genomes]
rs73429973	1.00[AMR][1000 genomes]
rs73429976	1.00[AMR][1000 genomes]
rs73429978	1.00[AMR][1000 genomes]
rs73429979	1.00[AMR][1000 genomes]
rs73429980	1.00[AMR][1000 genomes]
rs73429983	1.00[AMR][1000 genomes]
rs73429987	1.00[AMR][1000 genomes]
rs73429988	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429990	1.00[AMR][1000 genomes]
rs73429993	1.00[AMR][1000 genomes]
rs73429997	1.00[AMR][1000 genomes]
rs73429998	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429999	1.00[AMR][1000 genomes]
rs73430001	1.00[AMR][1000 genomes]
rs73431904	1.00[AMR][1000 genomes]
rs73431905	1.00[AMR][1000 genomes]
rs73431906	1.00[AMR][1000 genomes]
rs73431910	1.00[AMR][1000 genomes]
rs73431914	1.00[AMR][1000 genomes]
rs73431924	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431928	1.00[AMR][1000 genomes]
rs73431929	1.00[AMR][1000 genomes]
rs73431934	0.85[AFR][1000 genomes]
rs73431939	0.84[AFR][1000 genomes]
rs73431940	0.84[AFR][1000 genomes]
rs73431941	0.84[AFR][1000 genomes]
rs73431945	0.85[AFR][1000 genomes]
rs73431949	0.84[AFR][1000 genomes]
rs73431961	0.84[AFR][1000 genomes]
rs73431967	0.84[AFR][1000 genomes]
rs73431976	0.84[AFR][1000 genomes]
rs73431981	0.84[AFR][1000 genomes]
rs73431995	0.80[AFR][1000 genomes]
rs73431997	0.80[AFR][1000 genomes]
rs73433810	0.80[AFR][1000 genomes]
rs73433856	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119830800-119833600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:119831200-119842000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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