Variant report

Variant	rs73436469
Chromosome Location	chr7:112330436-112330437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17159929	1.00[EUR][1000 genomes]
rs60112566	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61617214	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950471	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960384	1.00[EUR][1000 genomes]
rs73436475	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436487	0.82[AMR][1000 genomes]
rs73436488	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436494	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436497	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436499	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438310	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438320	1.00[EUR][1000 genomes]
rs73438322	1.00[EUR][1000 genomes]
rs7784144	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799100	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3477467	chr7:112329242-112330534	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3507605	chr7:112329319-112330470	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3507607	chr7:112329326-112330523	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112329000-112330600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:112329600-112330600	Enhancers	Fetal Intestine Large	intestine
3	chr7:112330000-112330600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:112330200-112330600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:112330200-112332400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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