Variant report
| Variant | rs73436488 |
|---|---|
| Chromosome Location | chr7:112367759-112367760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs17159929 | 1.00[EUR][1000 genomes] |
| rs60112566 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61617214 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6950471 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6960384 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73436469 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73436475 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73436487 | 0.91[AMR][1000 genomes] |
| rs73436494 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73436497 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73436499 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73438310 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73438320 | 1.00[EUR][1000 genomes] |
| rs73438322 | 1.00[EUR][1000 genomes] |
| rs7784144 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7799100 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7801228 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7808346 | 1.00[EUR][1000 genomes] |
| rs821784 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112364600-112388400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
