Variant report

Variant	rs73436499
Chromosome Location	chr7:112388122-112388123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17159929	1.00[EUR][1000 genomes]
rs60112566	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61617214	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960384	1.00[EUR][1000 genomes]
rs73436469	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436475	1.00[EUR][1000 genomes]
rs73436487	0.82[AMR][1000 genomes]
rs73436488	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436494	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436497	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438320	1.00[EUR][1000 genomes]
rs73438322	1.00[EUR][1000 genomes]
rs7784144	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799100	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808346	1.00[EUR][1000 genomes]
rs821784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
3	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:112386600-112388600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:112387200-112388200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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