Variant report

Variant	rs60112566
Chromosome Location	chr7:112378823-112378824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17159929	1.00[EUR][1000 genomes]
rs61617214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950471	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960384	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436469	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436475	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436487	0.91[AMR][1000 genomes]
rs73436488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73436499	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438310	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438320	1.00[EUR][1000 genomes]
rs73438322	1.00[EUR][1000 genomes]
rs7784144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799100	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801228	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808346	1.00[EUR][1000 genomes]
rs821784	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112374800-112384600	Weak transcription	Fetal Heart	heart
3	chr7:112378400-112381000	ZNF genes & repeats	Aorta	Aorta
4	chr7:112378800-112379400	Weak transcription	Pancreas	Pancrea
5	chr7:112378800-112380400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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